Index

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__init__() (odetoolbox.analytic_integrator.AnalyticIntegrator method) (odetoolbox.mixed_integrator.MixedIntegrator method) (odetoolbox.shapes.Shape method) (odetoolbox.stiffness.StiffnessTester method) (odetoolbox.system_of_shapes.SystemOfShapes method)

__str__() (odetoolbox.shapes.Shape method)

A

all_variable_symbols (odetoolbox.integrator.Integrator attribute)

analysis() (in module odetoolbox) AnalyticIntegrator (class in odetoolbox.analytic_integrator)

C

check_stiffness() (odetoolbox.stiffness.StiffnessTester method)

Config (class in odetoolbox.config) config (odetoolbox.config.Config attribute)

D

default_assumptions (odetoolbox.sympy_helpers.SymmetricEq attribute)

DependencyGraphPlotter (class in odetoolbox.dependency_graph_plotter) disable_cache_update() (odetoolbox.analytic_integrator.AnalyticIntegrator method)

E

enable_cache_update() (odetoolbox.analytic_integrator.AnalyticIntegrator method)

F

find_inhomogeneous_singularities() (odetoolbox.singularity_detection.SingularityDetection static method) find_propagator_singularities() (odetoolbox.singularity_detection.SingularityDetection static method) find_singularity_conditions_in_expression_() (odetoolbox.singularity_detection.SingularityDetection static method)

from_function() (odetoolbox.shapes.Shape class method) from_json() (odetoolbox.shapes.Shape class method) from_ode() (odetoolbox.shapes.Shape class method) from_shapes() (odetoolbox.system_of_shapes.SystemOfShapes class method)

G

generate_numeric_solver() (odetoolbox.system_of_shapes.SystemOfShapes method) generate_propagator_solver() (odetoolbox.system_of_shapes.SystemOfShapes method) get_all_variable_symbols() (odetoolbox.analytic_integrator.AnalyticIntegrator method) (odetoolbox.shapes.Shape method) get_block_diagonal_blocks() (in module odetoolbox.system_of_shapes) get_connected_symbols() (odetoolbox.system_of_shapes.SystemOfShapes method) get_dependency_edges() (odetoolbox.system_of_shapes.SystemOfShapes method) get_initial_value() (odetoolbox.shapes.Shape method) (odetoolbox.system_of_shapes.SystemOfShapes method)

get_jacobian_matrix() (odetoolbox.system_of_shapes.SystemOfShapes method) get_lin_cc_symbols() (odetoolbox.system_of_shapes.SystemOfShapes method) get_shape_by_symbol() (odetoolbox.system_of_shapes.SystemOfShapes method) get_sorted_spike_times() (odetoolbox.integrator.Integrator method) get_spike_times() (odetoolbox.integrator.Integrator method) get_state_variables() (odetoolbox.shapes.Shape method) get_sub_system() (odetoolbox.system_of_shapes.SystemOfShapes method) get_value() (odetoolbox.analytic_integrator.AnalyticIntegrator method) GetBlockDiagonalException

I

import_matplotlib() (in module odetoolbox.plot_helper) integrate_ode() (odetoolbox.mixed_integrator.MixedIntegrator method) Integrator (class in odetoolbox.integrator)

integrator_debug_plot() (odetoolbox.mixed_integrator.MixedIntegrator method) is_homogeneous() (odetoolbox.shapes.Shape method) is_lin_const_coeff() (odetoolbox.shapes.Shape method) is_lin_const_coeff_in() (odetoolbox.shapes.Shape method)

K

keys() (odetoolbox.config.Config method)

M

MalformedInputException MixedIntegrator (class in odetoolbox.mixed_integrator) module odetoolbox odetoolbox.analytic_integrator odetoolbox.config odetoolbox.dependency_graph_plotter odetoolbox.integrator odetoolbox.mixed_integrator odetoolbox.plot_helper odetoolbox.shapes odetoolbox.singularity_detection odetoolbox.spike_generator odetoolbox.stiffness odetoolbox.sympy_helpers odetoolbox.system_of_shapes

N

numerical_jacobian() (odetoolbox.mixed_integrator.MixedIntegrator method)

NumericalIssueException

O

odetoolbox module odetoolbox.analytic_integrator module odetoolbox.config module odetoolbox.dependency_graph_plotter module odetoolbox.integrator module odetoolbox.mixed_integrator module odetoolbox.plot_helper module

odetoolbox.shapes module odetoolbox.singularity_detection module odetoolbox.spike_generator module odetoolbox.stiffness module odetoolbox.sympy_helpers module odetoolbox.system_of_shapes module

P

ParametersIncompleteException plot_graph() (odetoolbox.dependency_graph_plotter.DependencyGraphPlotter class method)

propagate_lin_cc_judgements() (odetoolbox.system_of_shapes.SystemOfShapes method) PropagatorGenerationException

R

random_seed (odetoolbox.stiffness.StiffnessTester property) reconstitute_expr() (odetoolbox.shapes.Shape method) (odetoolbox.system_of_shapes.SystemOfShapes method)

reset() (odetoolbox.analytic_integrator.AnalyticIntegrator method)

S

set_initial_values() (odetoolbox.analytic_integrator.AnalyticIntegrator method) set_spike_times() (odetoolbox.integrator.Integrator method) Shape (class in odetoolbox.shapes) shape_order_from_system_matrix() (odetoolbox.system_of_shapes.SystemOfShapes method) SingularityDetection (class in odetoolbox.singularity_detection) SingularityDetectionException spike_times_from_json() (odetoolbox.spike_generator.SpikeGenerator class method)

SpikeGenerator (class in odetoolbox.spike_generator) split_lin_inhom_nonlin() (odetoolbox.shapes.Shape static method) step() (odetoolbox.mixed_integrator.MixedIntegrator method) StiffnessTester (class in odetoolbox.stiffness) symbol_in_expression() (in module odetoolbox.sympy_helpers) SymmetricEq (class in odetoolbox.sympy_helpers) SympyPrinter (class in odetoolbox.sympy_helpers) SystemOfShapes (class in odetoolbox.system_of_shapes)